PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00298g01210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 184aa    MW: 19577.1 Da    PI: 9.6554
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00298g01210.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-11151175126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               ykt+lC++f + G C +G+rC+FaHg
  Peaxi162Scf00298g01210.1 151 YKTKLCDNFTK-GSCTFGERCHFAHG 175
                               9**********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547913.8E-1252128IPR004088K Homology domain, type 1
SMARTSM003222.4E-856126IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.9E-1357126IPR004088K Homology domain, type 1
PROSITE profilePS5008412.28657121IPR004088K Homology domain, type 1
CDDcd001054.23E-1059121No hitNo description
PfamPF000132.9E-859123IPR004088K Homology domain, type 1
SuperFamilySSF902292.75E-9148180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-16149181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389150177IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7150176IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9151175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKFEDKFHFA HGYWEIGKSI VPSHEDPRAM GARPIPSHFG GRMEPAVSGT AASFGTSATA  60
KISVDASLAG PIIGKSSVNS KQICRQTGAK LAIRDHETDQ TLKNIELEGT FEQISQASAM  120
VRELINSLGS VGRQGRAPAG RGGPAPAMSN YKTKLCDNFT KGSCTFGERC HFAHGAAELR  180
KSGV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780696.11e-106PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016511462.11e-106PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-64C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLK4D2B71e-103K4D2B7_SOLLC; Uncharacterized protein
STRINGSolyc10g078750.1.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-50C3H family protein